updated readme

.Rbuildignore

@@ -5,7 +5,7 @@
 ^README\.Rmd$
 ^\.travis\.yml$
 ^codecov\.yml$
-inst/shiny-examples/rsconnect
+inst/shiny-examples/
 hex_logo
 paper
 rsconnect/

README.Rmd

@@ -19,12 +19,14 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![Travis build status](https://travis-ci.org/santiago1234/optimalcodonR.svg?branch=master)](https://travis-ci.org/santiago1234/optimalcodonR)
 [![Codecov test coverage](https://codecov.io/gh/santiago1234/optimalcodonR/branch/master/graph/badge.svg)](https://codecov.io/gh/santiago1234/optimalcodonR?branch=master)
-[![Lifecycle: maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
+[![](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)
 <!-- badges: end -->
 
+This is the R package accompanying our publication: **opticon**
+
 The goal of optimalcodonR is to ...
 
-### [Try our interactive web application!](http://maple:3838/smedina/CodonOptimization/)
+### [Try our interactive web application!](https://smedina.shinyapps.io/opticon/)
 
 in production [Medina et al 2020](https://www.biorxiv.org/)
 

README.md

@@ -9,13 +9,14 @@
 status](https://travis-ci.org/santiago1234/optimalcodonR.svg?branch=master)](https://travis-ci.org/santiago1234/optimalcodonR)
 [![Codecov test
 coverage](https://codecov.io/gh/santiago1234/optimalcodonR/branch/master/graph/badge.svg)](https://codecov.io/gh/santiago1234/optimalcodonR?branch=master)
-[![Lifecycle:
-maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
+[![](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)
 <!-- badges: end -->
 
+This is the R package accompanying our publication: **opticon**
+
 The goal of optimalcodonR is to …
 
-### [Try our interactive web application\!](http://maple:3838/smedina/CodonOptimization/)
+### [Try our interactive web application\!](https://smedina.shinyapps.io/opticon/)
 
 in production [Medina et al 2020](https://www.biorxiv.org/)