Merge pull request #326 from sbmlteam/small-fixes

Various small fixes

src/sbml/AlgebraicRule.cpp

@@ -371,7 +371,7 @@ AlgebraicRule_create(unsigned int level, unsigned int version)
     AlgebraicRule* obj = new AlgebraicRule(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -387,7 +387,7 @@ AlgebraicRule_createWithNS (SBMLNamespaces_t* sbmlns)
     AlgebraicRule* obj = new AlgebraicRule(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/AssignmentRule.cpp

@@ -450,7 +450,7 @@ AssignmentRule_create(unsigned int level, unsigned int version)
     AssignmentRule* obj = new AssignmentRule(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -466,7 +466,7 @@ AssignmentRule_createWithNS (SBMLNamespaces_t* sbmlns)
     AssignmentRule* obj = new AssignmentRule(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Compartment.cpp

@@ -1999,7 +1999,7 @@ ListOfCompartments::createObject (XMLInputStream& stream)
     {
       object = new Compartment(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new Compartment(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -2029,7 +2029,7 @@ Compartment_create (unsigned int level, unsigned int version)
     Compartment* obj = new Compartment(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -2045,7 +2045,7 @@ Compartment_createWithNS (SBMLNamespaces_t* sbmlns)
     Compartment* obj = new Compartment(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/CompartmentType.cpp

@@ -807,7 +807,7 @@ ListOfCompartmentTypes::createObject (XMLInputStream& stream)
     {
       object = new CompartmentType(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       // compartment type does not exist in L3
       object = new CompartmentType(2,4);
@@ -837,7 +837,7 @@ CompartmentType_create (unsigned int level, unsigned int version)
     CompartmentType* obj = new CompartmentType(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -853,7 +853,7 @@ CompartmentType_createWithNS (SBMLNamespaces_t* sbmlns)
     CompartmentType* obj = new CompartmentType(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Constraint.cpp

@@ -1076,7 +1076,7 @@ ListOfConstraints::createObject (XMLInputStream& stream)
     {
       object = new Constraint(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new Constraint(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1107,7 +1107,7 @@ Constraint_create (unsigned int level, unsigned int version)
     Constraint* obj = new Constraint(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -1123,7 +1123,7 @@ Constraint_createWithNS (SBMLNamespaces_t* sbmlns)
     Constraint* obj = new Constraint(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Delay.cpp

@@ -856,7 +856,7 @@ Delay_create (unsigned int level, unsigned int version)
     Delay* obj = new Delay(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -872,7 +872,7 @@ Delay_createWithNS (SBMLNamespaces_t* sbmlns)
     Delay* obj = new Delay(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Event.cpp

@@ -1281,7 +1281,7 @@ Event::createObject (XMLInputStream& stream)
     {
       mTrigger = new Trigger(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       mTrigger = new Trigger(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1310,7 +1310,7 @@ Event::createObject (XMLInputStream& stream)
     {
       mDelay = new Delay(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       mDelay = new Delay(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1341,7 +1341,7 @@ Event::createObject (XMLInputStream& stream)
     {
       mPriority = new Priority(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       mPriority = new Priority(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -2293,7 +2293,7 @@ ListOfEvents::createObject (XMLInputStream& stream)
     {
       object = new Event(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new Event(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -2324,7 +2324,7 @@ Event_create (unsigned int level, unsigned int version)
     Event* obj = new Event(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -2340,7 +2340,7 @@ Event_createWithNS (SBMLNamespaces_t* sbmlns)
     Event* obj = new Event(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/EventAssignment.cpp

@@ -1212,7 +1212,7 @@ ListOfEventAssignments::createObject (XMLInputStream& stream)
     {
       object = new EventAssignment(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new EventAssignment(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1243,7 +1243,7 @@ EventAssignment_create (unsigned int level, unsigned int version)
     EventAssignment* obj = new EventAssignment(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -1259,7 +1259,7 @@ EventAssignment_createWithNS (SBMLNamespaces_t* sbmlns)
     EventAssignment* obj = new EventAssignment(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/FunctionDefinition.cpp

@@ -1292,7 +1292,7 @@ ListOfFunctionDefinitions::createObject (XMLInputStream& stream)
     {
       object = new FunctionDefinition(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new FunctionDefinition(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1322,7 +1322,7 @@ FunctionDefinition_create (unsigned int level, unsigned int version)
     FunctionDefinition* obj = new FunctionDefinition(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -1338,7 +1338,7 @@ FunctionDefinition_createWithNS (SBMLNamespaces_t* sbmlns)
     FunctionDefinition* obj = new FunctionDefinition(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/InitialAssignment.cpp

@@ -1194,7 +1194,7 @@ ListOfInitialAssignments::createObject (XMLInputStream& stream)
     {
       object = new InitialAssignment(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new InitialAssignment(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1225,7 +1225,7 @@ InitialAssignment_create (unsigned int level, unsigned int version)
     InitialAssignment* obj = new InitialAssignment(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -1241,7 +1241,7 @@ InitialAssignment_createWithNS (SBMLNamespaces_t* sbmlns)
     InitialAssignment* obj = new InitialAssignment(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/KineticLaw.cpp

@@ -2007,7 +2007,7 @@ KineticLaw_create (unsigned int level, unsigned int version)
     KineticLaw* obj = new KineticLaw(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -2023,7 +2023,7 @@ KineticLaw_createWithNS (SBMLNamespaces_t* sbmlns)
     KineticLaw* obj = new KineticLaw(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/LocalParameter.cpp

@@ -752,7 +752,7 @@ ListOfLocalParameters::createObject (XMLInputStream& stream)
     {
       object = new LocalParameter(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new LocalParameter(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -782,7 +782,7 @@ LocalParameter_create (unsigned int level, unsigned int version)
     LocalParameter* obj = new LocalParameter(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -798,7 +798,7 @@ LocalParameter_createWithNS (SBMLNamespaces_t* sbmlns)
     LocalParameter* obj = new LocalParameter(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Model.cpp

@@ -7104,7 +7104,7 @@ Model_create (unsigned int level, unsigned int version)
     Model* obj = new Model(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -7120,7 +7120,7 @@ Model_createWithNS (SBMLNamespaces_t* sbmlns)
     Model* obj = new Model(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/ModifierSpeciesReference.cpp

@@ -397,7 +397,7 @@ ModifierSpeciesReference_create(unsigned int level, unsigned int version)
     ModifierSpeciesReference* obj = new ModifierSpeciesReference(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -413,7 +413,7 @@ ModifierSpeciesReference_createWithNS (SBMLNamespaces_t* sbmlns)
     ModifierSpeciesReference* obj = new ModifierSpeciesReference(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Parameter.cpp

@@ -1918,7 +1918,7 @@ ListOfParameters::createObject (XMLInputStream& stream)
     {
       object = new Parameter(getSBMLNamespaces());
     }
-    catch (SBMLConstructorException*)
+    catch (SBMLConstructorException &)
     {
       object = new Parameter(SBMLDocument::getDefaultLevel(),
         SBMLDocument::getDefaultVersion());
@@ -1948,7 +1948,7 @@ Parameter_create (unsigned int level, unsigned int version)
     Parameter* obj = new Parameter(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -1964,7 +1964,7 @@ Parameter_createWithNS (SBMLNamespaces_t* sbmlns)
     Parameter* obj = new Parameter(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }

src/sbml/Priority.cpp

@@ -703,7 +703,7 @@ Priority_create (unsigned int level, unsigned int version)
     Priority* obj = new Priority(level,version);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }
@@ -719,7 +719,7 @@ Priority_createWithNS (SBMLNamespaces_t* sbmlns)
     Priority* obj = new Priority(sbmlns);
     return obj;
   }
-  catch (SBMLConstructorException)
+  catch (SBMLConstructorException &)
   {
     return NULL;
   }