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@sib-swiss

SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 966 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 76 34

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 54 22

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 53 14

  5. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 41 11

  6. glittr glittr Public

    A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

    PHP 35 1

Repositories

Showing 10 of 116 repositories
  • sparql-llm Public

    🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Sep 19, 2024
  • queryLibrary Public

    Collection of OMOP predefined queries.

    sib-swiss/queryLibrary’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 19, 2024
  • kgsteward Public

    Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)

    sib-swiss/kgsteward’s past year of commit activity
    Python 4 GPL-3.0 2 0 1 Updated Sep 19, 2024
  • sparql-examples-utils Public Forked from sib-swiss/sparql-examples

    A tool to maintain and test your SPARQL examples

    sib-swiss/sparql-examples-utils’s past year of commit activity
    Java 2 5 3 0 Updated Sep 18, 2024
  • RNAseq-introduction-training Public

    Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.

    sib-swiss/RNAseq-introduction-training’s past year of commit activity
    13 CC-BY-4.0 7 2 0 Updated Sep 18, 2024
  • sib-software-stack Public

    Scripts and documentation to deploy the SIB software stack

    sib-swiss/sib-software-stack’s past year of commit activity
    Perl 1 0 0 0 Updated Sep 17, 2024
  • sib-swiss/dsSwissKnife’s past year of commit activity
    R 4 1 0 0 Updated Sep 17, 2024
  • containers-snakemake-training Public Forked from sib-swiss/containers-introduction-training

    Course website "Introduction to Containers and Snakemake for Reproducible Research"

    sib-swiss/containers-snakemake-training’s past year of commit activity
    R 4 CC-BY-SA-4.0 13 0 0 Updated Sep 16, 2024
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
    HTML 5 5 5 3 Updated Sep 16, 2024
  • sib-swiss/single-cell-python-training’s past year of commit activity
    HTML 1 CC-BY-4.0 0 0 0 Updated Sep 15, 2024

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