Value in Context Neuroimaging study

This repository contains the preprocessing and analysis scripts for this project. Data and task scripts are on the SHLAB S drive under the VNI project directory

1) Preprocessing

• Spreadsheet of the visual quality control notes

MRIQC

• Group T1w and BOLD reports (html and tsv) with image quality metrics (IQM)
• MRIQC report key (brief descriptions of IQM)
• MRIQC summary of results
• Instructions for running MRIQC using singularity container on RDAC

fMRIPrep

• Instructions for running fMRIprep using singularity container on RDAC
• Bash script for running fMRIprep on this dataset
• CITATION.md provided by fMRIprep for describing fMRIprep in manuscript

Timing files

• Script for creating event files (Matlab)
• Script for creating onset timing and dummy EV (for missed trials) files for FSL(R)

2) Analysis

Behavior

code

• Cleaning risky decision-making (RDM) data script (e.g. removing missed trials)
• Quality analysis of RDM script
• RDM analysis (glmer) script

documentation

• Quality analysis document
• RDM analysis document

figures

• output from analysis scripts

fMRI (BOLD) - not created yet

3) Task Design

• Design parameters document for the risky decision making choice set
• script that generates figures for design parameters document
• figures included in the design parameters document