Fix by pre-commit

stajichlab · Oct 5, 2023 · 4f015c1 · 4f015c1
1 parent d6a564f
commit 4f015c1
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/CITATION.cff b/CITATION.cff
@@ -43,7 +43,7 @@ abstract: >-
 
   The assumptions in this approach are that the markers are
   generally single copy in genomes and taking best hit is
-  sufficient first approximation for identifying orthologs. 
+  sufficient first approximation for identifying orthologs.
 keywords:
   - phylogenomics
 license: MIT

diff --git a/misc/phyling_flowchart.svg b/misc/phyling_flowchart.svg
diff --git a/tests/phylotree_test.py b/tests/phylotree_test.py
@@ -8,39 +8,39 @@ def test_on_pep_single_tree():
     inputs = list(Path("tests/pep_align_single").iterdir())
     tree_generator_obj = tree_generator("upgma", 1, *inputs)
     tree = tree_generator_obj.get()
-    assert isinstance(tree, Phylo.BaseTree.Tree) == True
+    assert isinstance(tree, Phylo.BaseTree.Tree) is True
 
 
 def test_on_pep_consensus_tree():
     inputs = list(Path("tests/pep_align_consensus").iterdir())
     tree_generator_obj = tree_generator("upgma", 1, *inputs)
     tree = tree_generator_obj.get()
-    assert isinstance(tree, Phylo.BaseTree.Tree) == True
+    assert isinstance(tree, Phylo.BaseTree.Tree) is True
 
 
 def test_on_cds_single_tree():
     inputs = list(Path("tests/cds_align_single").iterdir())
     tree_generator_obj = tree_generator("upgma", 1, *inputs)
     tree = tree_generator_obj.get()
-    assert isinstance(tree, Phylo.BaseTree.Tree) == True
+    assert isinstance(tree, Phylo.BaseTree.Tree) is True
 
 
 def test_on_cds_consensus_tree():
     inputs = list(Path("tests/cds_align_consensus").iterdir())
     tree_generator_obj = tree_generator("upgma", 1, *inputs)
     tree = tree_generator_obj.get()
-    assert isinstance(tree, Phylo.BaseTree.Tree) == True
+    assert isinstance(tree, Phylo.BaseTree.Tree) is True
 
 
 def test_nj():
     inputs = list(Path("tests/cds_align_consensus").iterdir())
     tree_generator_obj = tree_generator("nj", 1, *inputs)
     tree = tree_generator_obj.get()
-    assert isinstance(tree, Phylo.BaseTree.Tree) == True
+    assert isinstance(tree, Phylo.BaseTree.Tree) is True
 
 
 def test_fasttree():
     inputs = list(Path("tests/cds_align_consensus").iterdir())
     tree_generator_obj = tree_generator("ft", 1, *inputs)
     tree = tree_generator_obj.get()
-    assert isinstance(tree, Phylo.BaseTree.Tree) == True
+    assert isinstance(tree, Phylo.BaseTree.Tree) is True