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Feature #2

Merged
merged 59 commits into from
Jul 19, 2024
Merged

Feature #2

merged 59 commits into from
Jul 19, 2024

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guuswilmink
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@guuswilmink guuswilmink commented Jul 12, 2024

Updates (12-Jul-2024):

  • Replaced temporary dataframes by using SQL queries in isStandard.R and countOccurrences.R; this also boosts performance
  • Added configuration yaml files (and code to use these configurations)
  • Flexible connection to database
  • Added CSVs with source codes and concept IDs (per mapping suggestions; D4.1: OMOP guidelines)
  • Added filtered concept tables (only including mapped concepts) to check for standard concept status
  • Code clean-up

Updates (16-Jul-2024):

  • Added roxygen style docstrings to functions
  • Major performance improvements by reducing number of SQL queries

Updates (19-Jul-2024):

  • Complete documentation
  • Build package using devtools::document()
  • Include classification concepts as non-standard

@guuswilmink guuswilmink marked this pull request as ready for review July 12, 2024 13:16
@guuswilmink guuswilmink marked this pull request as draft July 16, 2024 06:56
@guuswilmink guuswilmink marked this pull request as ready for review July 19, 2024 08:21
@guuswilmink guuswilmink merged commit b5c1e37 into main Jul 19, 2024
guuswilmink added a commit that referenced this pull request Aug 12, 2024
remove unnecessary files
@guuswilmink guuswilmink deleted the feature branch August 14, 2024 05:48
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