A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
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Updated
Mar 15, 2023 - JavaScript
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
Code and simulations using biologically annotated neural networks
Three bacterial GWAS methods all rolled into one easy-to-use R package
A faster lmm for GWAS. Supports GPU backend.
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
Higher-order genetic interaction discovery with network-based biological priors.
tips and tricks in genome-wide association studies - a tutorial
Code and simulations using interaction-LD score regression
A curated list (with links) of useful tools for genome-wide association analysis.
A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
The multivariate MArginal ePIstasis Test
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
Make interactive LocusZoom plots from a local GWAS file
R package to perform data pre-processing for more informative bacterial GWAS
Recombines real genomic segments to simulate whole genomes
Tool for genome wide association studies with Bayesian inference and statistical learning
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