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Here are 32 public repositories matching this topic...
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
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Jul 12, 2024 - Python
ClairS - a deep-learning method for long-read somatic small variant calling
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Jul 12, 2024 - Python
CLI tool for flexible and fast adaptive sampling on ONT sequencers
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Jul 8, 2024 - Python
Assembly and intrahost/low-frequency variant calling for viral samples
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Jul 3, 2024 - Nextflow
A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals
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May 28, 2024
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
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May 21, 2024 - Python
Clair3-RNA - a long-read small variant caller for RNA sequencing data
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Apr 19, 2024 - Python
Wrapper to read fast5 and pod5 files.
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Mar 6, 2024 - Python
Wrapper to read fast5, slow5, blow5 and pod5 files.
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Mar 21, 2024 - Python
Unofficial client library to get data from Huawei router
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Jan 12, 2024 - Go
Magnipore: Differential single nucleotide changes of ONT signals
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Mar 4, 2024 - Red
Analyses of Penter, Borji & Nagler et al., 2023
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Nov 1, 2023 - R
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
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May 3, 2024 - HTML
Get L. pneumophila ST from long-read or hybrid assemblies.
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Jul 18, 2023 - Python
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