pipeline
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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Jun 12, 2024 - Nextflow
Assembly and binning of metagenomes
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Jun 10, 2024 - Nextflow
ChIP-seq peak-calling, QC and differential analysis pipeline.
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May 9, 2024 - Nextflow
A single-cell RNAseq pipeline for 10X genomics data
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Jun 4, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
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May 9, 2024 - Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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May 28, 2024 - Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
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Jan 27, 2020 - Nextflow
RNA-seq analysis pipeline for detection of gene-fusions
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Jun 11, 2024 - Nextflow
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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Jun 10, 2024 - Nextflow
Assembly and intrahost/low-frequency variant calling for viral samples
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Jun 12, 2024 - Nextflow
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
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Jun 12, 2024 - Nextflow
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
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Mar 23, 2024 - Nextflow
Call and score variants from WGS/WES of rare disease patients.
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Jun 10, 2024 - Nextflow
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
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May 9, 2024 - Nextflow
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