✨ PyogrioReaderIterDataPipe for reading vector OGR files #19
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Vectorized vector I/O using OGR!
An iterable-style DataPipe for vector data! Uses pyogrio with geopandas for the I/O. Included a doctest and unit test, added a new section in the API docs and some more intersphinx mappings.
weiji14
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Jun 9, 2022
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| Extra keyword arguments to pass to | ||
| `pyogrio.read_dataframe <https://pyogrio.readthedocs.io/en/latest/api.html#geopandas-integration>`_. |
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Ideally the intersphinx directive would look like this, but the permalink is not available for some reason. Closest I could get to pyogrio.read_dataframe is using https://pyogrio.readthedocs.io/en/latest/api.html#geopandas-integration.
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| Extra keyword arguments to pass to | |
| `pyogrio.read_dataframe <https://pyogrio.readthedocs.io/en/latest/api.html#geopandas-integration>`_. | |
| Extra keyword arguments to pass to :py:func:`pyogrio.read_dataframe`. |
Edit: PR at geopandas/pyogrio#130 to resolve this.
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Making a proper build matrix now! Minimal tests (no optional dependencies) run on Python 3.8, while full tests (with all dependencies) run on Python 3.9. Wanted to do Python 3.10 for full tests, but need to wait for rasterio 1.3.0 to come out of beta first.
Conserve GitHub Actions Continuous Integration resources when a Pull Request is in draft mode.
weiji14
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Jun 9, 2022
| @@ -21,6 +21,7 @@ classifiers = [ | |||
| python = "^3.8" | |||
| rioxarray = ">=0.10.0" | |||
| torchdata = ">=0.3.0" | |||
| pyogrio = {version = ">=0.4.0a1", extras = ["geopandas"], optional = true} | |||
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Need to bump this to stable pyogrio=0.4.0 version once that is released. Edit: see PR #21.
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Using the stable version of pyogrio, patch the intersphinx link as mentioned in #19 (comment), and bumped `geopandas` version in poetry.lock from 0.10.2 to 0.11.0 to reduce number of deprecation warnings. * 📌 Pin minimum pyogrio version to 0.4.0 Bumps [pyogrio](https://github.com/geopandas/pyogrio) from 0.4.0a1 to 0.4.0. - [Release notes](https://github.com/geopandas/pyogrio/releases) - [Changelog](https://github.com/geopandas/pyogrio/blob/v0.4.0/CHANGES.md) - [Commits](geopandas/pyogrio@v0.4.0a1...v0.4.0) * 📝 Update permalink to pyogrio.read_dataframe Get the intersphinx link to point to https://pyogrio.readthedocs.io/en/latest/api.html#pyogrio.read_dataframe. * ⬆️ Bump geopandas from 0.10.2 to 0.11.0 Bumps [geopandas](https://github.com/geopandas/geopandas) from 0.10.2 to 0.11.0. - [Release notes](https://github.com/geopandas/geopandas/releases) - [Changelog](https://github.com/geopandas/geopandas/blob/main/CHANGELOG.md) - [Commits](geopandas/geopandas@v0.10.2...v0.11.0)
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An iterable-style DataPipe for vector data! Also added Python 3.8 job to CI build matrix which doesn't include 'vector' dependencies. That job is also skipped when PR is in draft mode.
i/O handled using pyogrio. IterDataPipe based on https://github.com/pytorch/data/blob/v0.3.0/torchdata/datapipes/iter/load/iopath.py#L37-L83
Preview at https://zen3geo--19.org.readthedocs.build/en/19/api.html#module-zen3geo.datapipes.pyogrio
Note that since
pyogriois made an optional dependency, users would need to dopip install zen3geo[vector]to install the extra 'vector' packages that includespyogrioandgeopandas.TODO:
pyogrioas optional dependencyPyogrioReaderIterDataPipepyogriodependency in one runReferences: