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Source code for REACCH PNA eddy covariance CO2 flux towers

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Greenhouse Gas Flux Tower Datalogger Program

This older (pre-EasyFlux™) version of Campbell Scientific open-path eddy-covariance (OPEC) station code was customized to support the GHG monitoring towers operated for the Regional Approaches to Climate Change project. Some notable differences are outlined below. For new deployments, users are recommended to use EasyFlux-DL instead.

  • Drops support for ATI anemometers, LI-COR open-path IRGAs, and other sensors that were not used.
  • Adds support for Decagon 5TM soil probes and NDVI/PRI sensors, and certain closed-path gas analyzers by Picarro and Los Gatos Research.
  • Replaces the original dynamically-generated data tables with statically-defined ones (which actually changed many times).
  • Records additional program deployment metadata to separate table file (e.g. unique sensor values, compilation signatures, etc).
  • Adds custom logger menu and ConstTable which allows users to enable/disable sensors and update unique program values.

The conditionally-compiled data tables were replaced by static definitions with the intent of insulating post-processing scripts from changes in data table structure, namely from the addition or removal or sensors (i.e. instead of removing the column, it remains present but is filled with NANs). However, in practice, the structure of the tables still changed fairly often and it was necessary to write a script for translating older data files into newer formats for input to EddyPro. That script, along with required column translation metadata, are provided in the Tower Logger Post Processing repository linked below.

What's Here

  • default.cr3 - Program file for CR3000 data logger (CRBasic)
  • wiring_details.ods - Printable table of wiring connections (OpenDocument spreadsheet)
  • data_file_key.ods - Spreadsheet with details of each data table, including column labels, units, variable descriptors, calculation method, and relevant notes on individual fields (OpenDocument spreadsheet)

A detailed history of changes can be viewed in the CHANGELOG.

Related Works

Please refer to these other repositories for a more complete understanding of tower operations and data management:

Requirements

This program runs on a Campbell Scientific CR3000-series micrologger with firmware versions CR3000.Std.28.02 or earlier. More recent firmware versions may fail to compile the program file due to conflicts between defined variable units and units applied to field names in data tables.

Program Usage

Basic program configuration is done through user-defined constants at the start of the program file. Logger serial numbers are used to identify the correct set of constants.

More recent, undeployed program versions replace the lookup table of constants with a ConstTable and custom menu. The constants table allows users to enable or disable optional sensors, while the custom menu exposes the unique program values for editing. Changes made via both mechanisms are retained after power loss.

Acknowledgments

The core of this work was licensed at cost from Campbell Scientific, which also provided key technical documentation. Additional integration documentation was provided by Decagon Devices and Garmin, Intl.

The majority of new development was funded by the Regional Approaches to Climate Change for Pacific Northwest Agriculture project under National Institute of Food and Agriculture award #2011-68002-30191.

License

This software is provided with express written permission of Campbell Scientific, which retains all rights to its original work. You may freely use and modify this program provided the following copyright notices remain intact at the top of the program file:

'Copyright (c) 2011-2015, 2017 Washington State University. Shared with permission.
'Copyright (c) 2002, 2006, 2010 Campbell Scientific, Inc. All rights reserved.

Disclaimer

For complete terms, including software Limited Warranty disclaimer, please refer to https://www.campbellsci.com/terms.

Contributions to the original source code are disclaimed as follows (excerpted from The MIT License):

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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Source code for REACCH PNA eddy covariance CO2 flux towers

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