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yjunechoe committed Sep 2, 2023
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^inst/julia/Manifest.toml$
^inst/julia/JlmerClusterPerm/Manifest.toml$
^format/
^tests\README\.md$
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Tests and Coverage
================
02 September, 2023 09:24:44

- [Coverage](#coverage)
- [Unit Tests](#unit-tests)

This output is created by
[covrpage](https://github.com/yonicd/covrpage).

## Coverage

Coverage summary is created using the
[covr](https://github.com/r-lib/covr) package.

| Object | Coverage (%) |
|:----------------------------------------------------------------------|:------------:|
| jlmerclusterperm | 92.30 |
| [R/utils.R](../R/utils.R) | 78.57 |
| [R/permute_timewise_statistics.R](../R/permute_timewise_statistics.R) | 81.01 |
| [R/compute_timewise_statistics.R](../R/compute_timewise_statistics.R) | 88.64 |
| [R/aaa.R](../R/aaa.R) | 89.23 |
| [R/threshold_search.R](../R/threshold_search.R) | 89.47 |
| [R/jlmer_spec.R](../R/jlmer_spec.R) | 91.19 |
| [R/clusters_methods.R](../R/clusters_methods.R) | 93.83 |
| [R/calculate_pvalue.R](../R/calculate_pvalue.R) | 94.44 |
| [R/permute.R](../R/permute.R) | 95.24 |
| [R/clusterpermute.R](../R/clusterpermute.R) | 95.45 |
| [R/interop-utils-unexported.R](../R/interop-utils-unexported.R) | 96.00 |
| [R/tidy.R](../R/tidy.R) | 97.14 |
| [R/extract_clusters.R](../R/extract_clusters.R) | 100.00 |
| [R/interop-utils.R](../R/interop-utils.R) | 100.00 |
| [R/jlmer.R](../R/jlmer.R) | 100.00 |
| [R/julia_rng.R](../R/julia_rng.R) | 100.00 |

<br>

## Unit Tests

Unit Test summary is created using the
[testthat](https://github.com/r-lib/testthat) package.

| file | n | time | error | failed | skipped | warning |
|:------------------------------------------------------------------|----:|------:|------:|-------:|--------:|--------:|
| [test-aaa.R](testthat/test-aaa.R) | 4 | 45.21 | 0 | 0 | 0 | 0 |
| [test-clusterpermute.R](testthat/test-clusterpermute.R) | 10 | 21.30 | 0 | 0 | 0 | 0 |
| [test-jlmer.R](testthat/test-jlmer.R) | 6 | 2.27 | 0 | 0 | 0 | 0 |
| [test-jlmer_spec.R](testthat/test-jlmer_spec.R) | 5 | 0.09 | 0 | 0 | 0 | 0 |
| [test-julia_rng.R](testthat/test-julia_rng.R) | 9 | 0.12 | 0 | 0 | 0 | 0 |
| [test-permute.R](testthat/test-permute.R) | 7 | 1.38 | 0 | 0 | 0 | 0 |
| [test-progress.R](testthat/test-progress.R) | 5 | 0.06 | 0 | 0 | 0 | 0 |
| [test-singularity.R](testthat/test-singularity.R) | 3 | 3.72 | 0 | 0 | 0 | 0 |
| [test-threshold_search.R](testthat/test-threshold_search.R) | 1 | 0.25 | 0 | 0 | 0 | 0 |
| [test-timewise_statistics.R](testthat/test-timewise_statistics.R) | 9 | 0.08 | 0 | 0 | 0 | 0 |

<details closed>
<summary>
Show Detailed Test Results
</summary>

| file | context | test | status | n | time |
|:----------------------------------------------------------------------|:--------------------|:----------------------------------------------------------|:-------|----:|------:|
| [test-aaa.R](testthat/test-aaa.R#L11) | aaa | Setup with seed works (use 2 for testing) | PASS | 2 | 45.18 |
| [test-aaa.R](testthat/test-aaa.R#L27) | aaa | RNG initializes to seed=1 counter=0 | PASS | 2 | 0.03 |
| [test-clusterpermute.R](testthat/test-clusterpermute.R#L18) | clusterpermute | CPAs under the same RNG state are identical | PASS | 1 | 17.73 |
| [test-clusterpermute.R](testthat/test-clusterpermute.R#L33) | clusterpermute | Piecemeal and wholesale CPAs are identical | PASS | 4 | 0.03 |
| [test-clusterpermute.R](testthat/test-clusterpermute.R#L40) | clusterpermute | Errors on incompatible clusters | PASS | 3 | 2.19 |
| [test-clusterpermute.R](testthat/test-clusterpermute.R#L50) | clusterpermute | Errors on no predictors | PASS | 2 | 1.35 |
| [test-jlmer.R](testthat/test-jlmer.R#L14) | jlmer | direct and indirect fits identical | PASS | 2 | 1.11 |
| [test-jlmer.R](testthat/test-jlmer.R#L19) | jlmer | returns julia object | PASS | 2 | 0.00 |
| [test-jlmer.R](testthat/test-jlmer.R#L28) | jlmer | direct and indirect fits identical - mixed | PASS | 2 | 1.16 |
| [test-jlmer_spec.R](testthat/test-jlmer_spec.R#L2) | jlmer_spec | Minimal specification without grouping structures allowed | PASS | 2 | 0.03 |
| [test-jlmer_spec.R](testthat/test-jlmer_spec.R#L7) | jlmer_spec | Inform misspecifications in grouping structure | PASS | 2 | 0.03 |
| [test-jlmer_spec.R](testthat/test-jlmer_spec.R#L12) | jlmer_spec | Warn uneven time sampling rate | PASS | 1 | 0.03 |
| [test-julia_rng.R](testthat/test-julia_rng.R#L6) | julia_rng | RNG counter setter/getter | PASS | 2 | 0.06 |
| [test-julia_rng.R](testthat/test-julia_rng.R#L11) | julia_rng | RNG seed setter/getter | PASS | 2 | 0.01 |
| [test-julia_rng.R](testthat/test-julia_rng.R#L17) | julia_rng | RNG restore | PASS | 3 | 0.02 |
| [test-julia_rng.R](testthat/test-julia_rng.R#L23) | julia_rng | RNG generate random seed | PASS | 2 | 0.03 |
| [test-permute.R](testthat/test-permute.R#L20) | permute | preserves participant structure | PASS | 1 | 0.89 |
| [test-permute.R](testthat/test-permute.R#L27) | permute | preserves temporal structure | PASS | 1 | 0.05 |
| [test-permute.R](testthat/test-permute.R#L32) | permute | guesses type | PASS | 1 | 0.10 |
| [test-permute.R](testthat/test-permute.R#L36) | permute | increments counter | PASS | 1 | 0.02 |
| [test-permute.R](testthat/test-permute.R#L44) | permute | shuffling reproducibility | PASS | 1 | 0.08 |
| [test-permute.R](testthat/test-permute.R#L54) | permute | levels of a category shuffled together | PASS | 2 | 0.24 |
| [test-progress.R](testthat/test-progress.R#L6) | progress | No side effects when called empty | PASS | 1 | 0.02 |
| [test-progress.R](testthat/test-progress.R#L13) | progress | Side effect by show, width, or both | PASS | 3 | 0.03 |
| [test-progress.R](testthat/test-progress.R#L22) | progress | Restore startup option | PASS | 1 | 0.01 |
| [test-singularity.R](testthat/test-singularity.R#L12_L15) | singularity | Informs on singularity | PASS | 3 | 3.72 |
| [test-threshold_search.R](testthat/test-threshold_search.R#L15) | threshold_search | tests all steps | PASS | 1 | 0.25 |
| [test-timewise_statistics.R](testthat/test-timewise_statistics.R#L14) | timewise_statistics | chisq bound by 0-1 | PASS | 1 | 0.03 |
| [test-timewise_statistics.R](testthat/test-timewise_statistics.R#L18) | timewise_statistics | dims of empirical stats | PASS | 2 | 0.02 |
| [test-timewise_statistics.R](testthat/test-timewise_statistics.R#L23) | timewise_statistics | tidy dims of empirical stats | PASS | 2 | 0.00 |
| [test-timewise_statistics.R](testthat/test-timewise_statistics.R#L31) | timewise_statistics | dims of null stats | PASS | 2 | 0.01 |
| [test-timewise_statistics.R](testthat/test-timewise_statistics.R#L36) | timewise_statistics | tidy dims of null stats | PASS | 2 | 0.02 |

</details>
<details>
<summary>
Session Info
</summary>

| Field | Value |
|:---------|:----------------------------------|
| Version | R version 4.3.0 (2023-04-21 ucrt) |
| Platform | x86_64-w64-mingw32/x64 (64-bit) |
| Running | Windows 11 x64 (build 22621) |
| Language | English_United States |
| Timezone | America/New_York |

| Package | Version |
|:---------|:--------|
| testthat | 3.1.10 |
| covr | 3.6.2 |
| covrpage | 0.2 |

</details>
<!--- Final Status : pass --->

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