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Releases: CCBR/XAVIER

XAVIER 3.1.0

27 Aug 19:00
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new features

  • Add xavier gui subcommand to launch the graphical user interface. (#99, @kelly-sovacool)
    • Previously, xavier_gui (with an underscore) was a command in the ccbrpipeliner module.
  • Provide default exome targets for hg38 and mm10, which can be overridden by the optional --targets argument. (#102, @kelly-sovacool)
    • Previously, the --targets argument was required with no defaults.
  • Add new human test dataset (#27, @samarth8392)

bug fixes

  • Fix bug in the GUI that always used the Agilent targets file by default, instead of picking based on the genome. (#108, @samarth8392)
  • Fix bug in the driver script that caused the snakemake module not to be loaded on biowulf in some cases. (#111, @kelly-sovacool)
  • Increased memory for rules: BWA mem, qualimap, kraken. gatk_contamination is no longer a localrule. (#89, @samarth8392)

documentation updates

Full Changelog: v3.0.3...v3.1.0

v3.0.3

11 Jul 18:13
fe77c47
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What's Changed

Full Changelog: v3.0.2...v3.0.3

v3.0.2

19 Dec 15:31
fa69fab
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  • Documentation updates for GUI and other genome references
  • Additional IUPAC changes to play nice with GATK tools (non ACGTN codes convert to N)

v3.0.1

20 Oct 15:57
7f3c94f
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Hotfixes for all!

  • Increased memory for somatic merge rule
  • Fixed spooker/runner calls for run info
  • Fixed vcf2maf which missed the Intersection of calls

v3.0

15 Sep 16:49
aa94514
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Increment version with GUI