XAVIER 3.1.0

new features

• Add xavier gui subcommand to launch the graphical user interface. (#99, @kelly-sovacool)
  • Previously, xavier_gui (with an underscore) was a command in the ccbrpipeliner module.
• Provide default exome targets for hg38 and mm10, which can be overridden by the optional --targets argument. (#102, @kelly-sovacool)
  • Previously, the --targets argument was required with no defaults.
• Add new human test dataset (#27, @samarth8392)

bug fixes

• Fix bug in the GUI that always used the Agilent targets file by default, instead of picking based on the genome. (#108, @samarth8392)
• Fix bug in the driver script that caused the snakemake module not to be loaded on biowulf in some cases. (#111, @kelly-sovacool)
• Increased memory for rules: BWA mem, qualimap, kraken. gatk_contamination is no longer a localrule. (#89, @samarth8392)

documentation updates

• You can now cite XAVIER with the DOI 10.5281/zenodo.12727315. (#88, @kelly-sovacool)
• The docs website now has a dropdown menu to select which version to view. The latest release is shown by default. (#150, @kelly-sovacool)
• Other minor documentation improvements. (#92, @kelly-sovacool; #93, @samarth8392)

Full Changelog: v3.0.3...v3.1.0