Be aggressiveer 2

Fix SyN iteration generation for < 1mm res, and fix bug for those resolutions as well.

Be aggressiveer

• Export config variables which need to pass to scripts

Be aggressive

Largeish set of changes

• labelmasking now masks template-subject registrations
• registrations scale space is now log-space sampled
• increase aggressiveness of SyN
• Implement --fast option for low-memory and Mattes registrations
• Move all jobfiles into output directory for logging
• Log exact command-line call in logfiles
• Switch to using bash arrays

Requirements:

• should be run against ANTs built on new ITKv5 code which has big improvements to registration pipeline

But not too general

v0.2.2.1

In the case of single label, use extension of label

Stay general

Fix up label masking to be agnostic to input file type

But not too much

Need to be able to select subjects and templates separately, add a command-line parameter for this.

Spread the love

Adding ability to explicitly run a single template file through registration to facilitate BIDS parallelization

BIDS mic drop

Initial release for BIDS that actually is published in OpenNeuro.

Containerized Singularity Release

Containerized released using singularity and a wrapper than can submit jobs to a cluster.

Still requires qbatch to be installed and configured for the local cluster.