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Add "Exclude metadata fields from exported data?" option #313

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merged 7 commits into from
Jul 5, 2022

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@fedarko fedarko commented Sep 6, 2020

Closes #306, and should make merging log-ratios with sample metadata easier (as is done in the Gemelli tutorials, e.g. here).

I also fixed the build by updating black (used to style / check python code) to the latest version. This resulted in a lot of indentation changes to the docstrings. (These can probably be ignored; all of the substantial code changes here are on the JS side of the codebase.)

closes biocore#306 (I already said that in an earlier commit but w/e)
Looks like the main change is on docstring indentation. I don't
really care about this either way so I'm cool with going with what
black says.
Should un-break the build. This is mostly done out of personal
convenience, since Empress and Qurro both use global NPM packages
and I don't wanna have to bother with having both versions around on
my system. This is one of the cases where using global packages is a
bad idea, but oh well it's been very convenient up until like right
now :P

Eventually it would be nice to un-pin this, but there are probably
many more pressing things to worry about.
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fedarko commented Sep 8, 2020

@cameronmartino / @gwarmstrong would one of you be free to look over this sometime this week? This PR should make the Qurro steps in the Gemelli tutorials less painful.

fedarko added a commit to fedarko/qurro that referenced this pull request Jul 18, 2021
fedarko added a commit that referenced this pull request Jul 18, 2021
* Fix broken tutorial link to DEICODE Emperor biplot

* STY: Rerun things with later vsn of black

(Also documented in #313)
@fedarko fedarko merged commit 2509145 into biocore:master Jul 5, 2022
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Support excluding metadata columns from the "sample plot data" output TSV
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