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<jemalloc>: Unsupported system page size with cockroach 23.1.5 #106745

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fveauvy opened this issue Jul 13, 2023 · 7 comments
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<jemalloc>: Unsupported system page size with cockroach 23.1.5 #106745

fveauvy opened this issue Jul 13, 2023 · 7 comments
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B-arch-arm Issues specific to ARM64 builds (linux or macos) B-os-linux Issues specific to the Linux OS (any distribution) C-bug Code not up to spec/doc, specs & docs deemed correct. Solution expected to change code/behavior. db-cy-23 O-community Originated from the community T-storage Storage Team X-blathers-triaged blathers was able to find an owner

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@fveauvy
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fveauvy commented Jul 13, 2023

Describe the problem

I'm getting an error when running cockroachdb v23.1.5 linux-arm64. I'm using an Asahi Linux kernel (6.3.0-asahi-10-1-ARCH) running on a Mac M1 mini.

Cockroach fails with :

<jemalloc>: Unsupported system page size
<jemalloc>: Unsupported system page size
<jemalloc>: Unsupported system page size
runtime/cgo: malloc failed: Cannot allocate memory

Note that I don't get this error using the version 22.2.11 Docker image : cockroachdb/cockroach:arm64-v22.2.11

To Reproduce

Using Asahi Linux on a Apple Silicon Mac :

  1. docker pull cockroachdb/cockroach:23.1.5
  2. docker volume create roach-single
  3. docker run -it -v "roach-single:/cockroach/cockroach-data" cockroachdb/cockroach:23.1.5 start-single-node --insecure
  4. You'll see the error mentioned above in the console output

Expected behavior

Since cockroach 22.2.11 is working fine on linux/arm64 with Linux Asahi, I think it should also run with 23.1.5.

Additional data / screenshots

Here are some related links and issues :

CleanShot 2023-07-13 at 11 52 13

Additional context

We're migrating our CI/CD pipeline to use GitHub Actions Self-Hosted Runners. For some reasons, we want to use Linux and our available Mac Mini M1 in order to run testing workflows that includes CockroachDB services.

Jira issue: CRDB-29697

@fveauvy fveauvy added the C-bug Code not up to spec/doc, specs & docs deemed correct. Solution expected to change code/behavior. label Jul 13, 2023
@blathers-crl
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blathers-crl bot commented Jul 13, 2023

Hello, I am Blathers. I am here to help you get the issue triaged.

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If we have not gotten back to your issue within a few business days, you can try the following:

  • Join our community slack channel and ask on #cockroachdb.
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@blathers-crl blathers-crl bot added O-community Originated from the community X-blathers-triaged blathers was able to find an owner labels Jul 13, 2023
@RaduBerinde
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To fix this, we need to configure jemalloc to support a larger page size (--with-lg-page=16). However, in some cases that setting caused problems, at least a while back - #81581.

@blathers-crl blathers-crl bot added the T-storage Storage Team label Jul 13, 2023
@knz knz added B-unsupported-arch Non-x86_64 architectures: PPC, MIPS, etc B-os-linux Issues specific to the Linux OS (any distribution) B-arch-arm Issues specific to ARM64 builds (linux or macos) and removed B-unsupported-arch Non-x86_64 architectures: PPC, MIPS, etc labels Jul 13, 2023
@RaduBerinde
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@fveauvy I will try to tweak the jemalloc build settings for ARM to support larger pages. I do want to point out though that for now ARM support is best-effort and we don't recommend using it for production. We have filed internal tickets to improve the documentation to be more clear about this.

@fveauvy
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fveauvy commented Jul 17, 2023

@fveauvy I will try to tweak the jemalloc build settings for ARM to support larger pages. I do want to point out though that for now ARM support is best-effort and we don't recommend using it for production. We have filed internal tickets to improve the documentation to be more clear about this.

@RaduBerinde Duly noted. As I mentioned in additional context, we don't plan on using it for production purposes but for our unit/integration test environment with GitHub Actions self hosted runners.

Thanks a lot for your input.

RaduBerinde added a commit to RaduBerinde/cockroach that referenced this issue Jul 17, 2023
We have had two reports of users not being able to run cockroach 23.1
on linux/arm64 with 16k pages (jemalloc does not support the page
size).  This change attempts to fix this by compiling jemalloc with
16K page support, only in the linux/arm64 configuration.

Epic: None
Informs: cockroachdb#106745
Release note: None
craig bot pushed a commit that referenced this issue Jul 17, 2023
106923: go.mod: bump Pebble to 809057a10ee4 r=RaduBerinde a=sumeerbhola

809057a1 sstable: avoid caching meta blocks
03c97cda db: do not cache compaction block reads
a89c926f internal/cache: move Alloc and Free into package-level functions
9976c78b manifest: reduce test size under race
10d9e4a0 lint: disable during race tests
7bb765ec db: smoother thresholds for the delete pacer
02413ad7 cmd: enable benchmarking shared storage including the secondary cache
4606eaf6 db,sstable: bug fixes for keys with obsolete bit
9d75815f objstorage: close the shared provider including the catalog & cache
840866b8 ingest: Use Overlaps() to calculate L0 overlaps in excise
2ad4e668 vfs: Deflake TestDiskHealthChecking_File*
5afd803f db: add some logging for the cleaner
88bbab59 db: Bring back call to deleteObsoleteFiles in Close()
5c2da530 ingest: don't assume flushable ingests are locally present
a9a079d4 sharedobjcat: allow addition/deletion of object in same batch
52a12cd5 internal/manifest: delete L0Sublevels_LargeImport
168079ac metamorphic: test shared storage including the secondary cache
fa85ec45 db: deflake TestCompactionPickerScores
ca11d1bb *: allow virtual sstables to truncate range keys/dels
678f7e48 internal/manifest: link issue to skipped test

Epic: None
Release note: None

106929: c-deps: support 16K pages for ARM64 r=RaduBerinde a=RaduBerinde

We have had two reports of users not being able to run cockroach 23.1 on linux/arm64 with 16k pages (jemalloc does not support the page size). This change attempts to fix this by compiling jemalloc with 16K page support, only in the linux/arm64 configuration.

Epic: None
Informs: #106745
Release note: None

Co-authored-by: sumeerbhola <sumeer@cockroachlabs.com>
Co-authored-by: Radu Berinde <radu@cockroachlabs.com>
blathers-crl bot pushed a commit that referenced this issue Jul 18, 2023
We have had two reports of users not being able to run cockroach 23.1
on linux/arm64 with 16k pages (jemalloc does not support the page
size).  This change attempts to fix this by compiling jemalloc with
16K page support, only in the linux/arm64 configuration.

Epic: None
Informs: #106745
Release note: None
@RaduBerinde
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@fveauvy Hopefully the next 23.1.x release works.

rickystewart added a commit to rickystewart/cockroach that referenced this issue Jul 18, 2023
Epic: none
Release note (build): On Linux/ARM64, use 16k page sizes in `jemalloc`
Part of: cockroachdb#106745
craig bot pushed a commit that referenced this issue Jul 19, 2023
107128: c-deps: update archived c-deps to pick up #106929 r=rail,RaduBerinde a=rickystewart

Epic: none
Release note (build): On Linux/ARM64, use 16k page sizes in `jemalloc`
Part of: #106745

107178: Revert "github-pull-request-make: temporary workaround" r=healthy-pod a=knz

Epic: CRDB-18499

This reverts commit da33ea2.
Not needed any more since is merged now.

Co-authored-by: Ricky Stewart <ricky@cockroachlabs.com>
Co-authored-by: Raphael 'kena' Poss <knz@thaumogen.net>
@pawalt
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pawalt commented Dec 16, 2023

FYI this is fixed for me on the most recent version of CRDB. I'm also on Asahi kernel 6.5.0-asahi. This is the command that passed for me:

sudo docker run -it -v "roach-single:/cockroach/cockroach-data" cockroachdb/cockroach:v23.1.13 start-single-node --insecure

Thanks for the help @RaduBerinde

@RaduBerinde
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Thanks @pawalt! I will close this then.

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Labels
B-arch-arm Issues specific to ARM64 builds (linux or macos) B-os-linux Issues specific to the Linux OS (any distribution) C-bug Code not up to spec/doc, specs & docs deemed correct. Solution expected to change code/behavior. db-cy-23 O-community Originated from the community T-storage Storage Team X-blathers-triaged blathers was able to find an owner
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