Splice analysis using external data cannot be merged with local files

[zshu-alt]

Hello!
I was able to successfully run the FRASER analysis with 11 local bam files. To increase the sample size, I added the data in GTEx. The operation went smoothly at first. But in running rule AberrantSplicing_pipeline_Counting_03_filter_expression_FraseR_R:
There was an error like this:
Loading provided [counts]
Wed Apr 12 09:57:14 2023: Merging data ...
Wed Apr 12 09:57:17 2023: Calculate the PSI 5 and 3 values ...
Wed Apr 12 09:57:26 2023: Calculate the PSI site values ...
Error: subscript is a logical vector with out-of-bounds TRUE values
In addition: Warning message:
In .merge_two_Seqinfo_objects(x, y) :
The 2 combined objects have no sequence levels in common. (Use
suppressWarnings() to suppress this warning.)
Execution halted
Is it a merger problem? My bam file is compared by STAR software and fa in STAR database. I am sure it is hg19.
I uploaded my relevant files
How can I solve this problem? Increasing the sample size by external counting is important to me
I would really appreciate it if you could answer my questions.

sample_annotation_put.txt
nohup.log
config_put.txt

[vyepez88]

Hi! Weird, DROP should be able to recognize different chr styles. Can you double check if indeed your local BAM files have a different chr style than the external junction count matrices?

[AtaJadidAhari]

Hi @zshu-alt, were you able to sort this out?