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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    906 99

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 654 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 463 102

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 386 91

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 283 27

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 276 19

Repositories

Showing 10 of 38 repositories
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 14 0 0 0 Updated Sep 17, 2024
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 283 27 22 0 Updated Sep 17, 2024
  • marbl/ModDotPlot’s past year of commit activity
    Python 111 MIT 8 5 0 Updated Sep 17, 2024
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 654 179 5 2 Updated Sep 17, 2024
  • MetaCarvel Public

    MetaCarvel: A scaffolder for metagenomes

    marbl/MetaCarvel’s past year of commit activity
    C++ 13 MIT 15 2 0 Updated Sep 17, 2024
  • training Public

    Genome Assembly 102

    marbl/training’s past year of commit activity
    Shell 10 0 0 0 Updated Sep 16, 2024
  • HG002 Public

    A complete diploid human genome

    marbl/HG002’s past year of commit activity
    89 5 2 0 Updated Sep 10, 2024
  • CHM13 Public

    The complete sequence of a human genome

    marbl/CHM13’s past year of commit activity
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 127 25 26 0 Updated Aug 17, 2024
  • Primates Public

    Complete assemblies of non-human primate genomes

    marbl/Primates’s past year of commit activity
    37 3 1 0 Updated Aug 8, 2024