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I checked the readme and source code and I reached that this stack issue and push/pop opcodes have these purposes:
stack issue: you created it to implement a stack to use as a call stack (based on TODOs)
push/pop op codes: They are compiling into 2 op codes such as load memory, sub and add. so they are not meant to be stack operations, also this VM was not a stack machine at all.
Overall I reached that these changes must fix the open issue.
This PR contains some linting modifications. using builder for better performance. and some small changes on readme as well.