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Fix execution_resourceglobal vs. slot usage inconsistencies #168

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merged 2 commits into from
May 17, 2024
Merged

Fix execution_resourceglobal vs. slot usage inconsistencies #168

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446af8e
fix inconsistencies between global slot usage execution_resource
brynnz22 May 16, 2024
5e564d5
remove executionResourceEnum from old file - moved to new file
brynnz22 May 16, 2024
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28 changes: 0 additions & 28 deletions src/schema/basic_classes.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -430,7 +430,6 @@ classes:
# required: true
execution_resource:
required: true
range: ExecutionResourceEnum
part_of:
required: true
description: >-
Expand Down Expand Up @@ -566,33 +565,6 @@ slots:
- For example Low read count from a sequencer, malformed fastq files, etc)

enums:
ExecutionResourceEnum:
see_also:
- nmdc:DoiProviderEnum
- nmdc:ProcessingInstitutionEnum
- nmdc:ExecutionResourceEnum
permissible_values:
NERSC-Cori:
description: NERSC Cori supercomputer
aliases:
- Cori
NERSC-Perlmutter:
description: NERSC Perlmutter supercomputer
aliases:
- Perlmutter
- Saul
EMSL:
description: Environmental Molecular Sciences Laboratory
EMSL-RZR:
description: Environmental Molecular Sciences Laboratory RZR cluster
aliases:
- RZR
JGI:
description: Joint Genome Institute
LANL-B-div:
description: LANL Bioscience Division
aliases:
- B-div
CreditEnum:
permissible_values:
Conceptualization:
Expand Down
30 changes: 29 additions & 1 deletion src/schema/basic_slots.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ slots:
- value: "https://github.com/microbiomedata/metaMS/blob/master/metaMS/gcmsWorkflow.py"

execution_resource:
range: string
range: ExecutionResourceEnum
description: The computing resource or facility where the workflow was executed.
examples:
- value: NERSC-Cori
Expand Down Expand Up @@ -570,6 +570,34 @@ slots:

enums:

ExecutionResourceEnum:
see_also:
- nmdc:DoiProviderEnum
- nmdc:ProcessingInstitutionEnum
- nmdc:ExecutionResourceEnum
permissible_values:
NERSC-Cori:
description: NERSC Cori supercomputer
aliases:
- Cori
NERSC-Perlmutter:
description: NERSC Perlmutter supercomputer
aliases:
- Perlmutter
- Saul
EMSL:
description: Environmental Molecular Sciences Laboratory
EMSL-RZR:
description: Environmental Molecular Sciences Laboratory RZR cluster
aliases:
- RZR
JGI:
description: Joint Genome Institute
LANL-B-div:
description: LANL Bioscience Division
aliases:
- B-div

FileTypeEnum:
permissible_values:
Metagenome Raw Reads:
Expand Down
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