microbiomedata · brynnz22 · Jan 31, 2024 · Jan 26, 2024 · Jan 26, 2024 · Jan 26, 2024
diff --git a/src/data/invalid/Biosample-incomplete_napa_id.yaml b/src/data/invalid/Biosample-incomplete_napa_id.yaml
@@ -4,7 +4,7 @@ gold_biosample_identifiers:
 name: Lithgow State Coal Mine Calcium nutrients (early)
 description: Bulk Aqueous phase filtered water
 type: nmdc:Biosample
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Biosample-invalid_fire.yaml b/src/data/invalid/Biosample-invalid_fire.yaml
@@ -1,7 +1,7 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:Biosample
 fire: like a volcano
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Biosample-minimal-invalid-type.yaml b/src/data/invalid/Biosample-minimal-invalid-type.yaml
@@ -1,6 +1,6 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:UndefinedClass
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Biosample-minimal-no-id-but-with-type.yaml b/src/data/invalid/Biosample-minimal-no-id-but-with-type.yaml
@@ -1,5 +1,5 @@
 type: nmdc:Biosample
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Biosample-minimal-no-type.yaml b/src/data/invalid/Biosample-minimal-no-type.yaml
@@ -1,5 +1,5 @@
 id: nmdc:bsm-99-dtTMNb
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Biosample-non_boolean_embargo.yaml b/src/data/invalid/Biosample-non_boolean_embargo.yaml
@@ -1,6 +1,6 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:Biosample
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-Biosample-invalid_id.yaml b/src/data/invalid/Database-Biosample-invalid_id.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:local
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-Biosample-invalid_lat_lon_ranges.yaml b/src/data/invalid/Database-Biosample-invalid_lat_lon_ranges.yaml
@@ -5,7 +5,7 @@ biosample_set:
       - gold:Gb0101224
     name: Lithgow State Coal Mine Calcium nutrients (early)
     description: Bulk Aqueous phase filtered water
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -51,7 +51,7 @@ biosample_set:
       - gold:Gb0101225
     name: Lithgow State Coal Mine Calcium nutrients Extra
     description: Bulk Aqueous phase filtered water
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -97,7 +97,7 @@ biosample_set:
       - gold:Gb0101226
     name: Lithgow State Coal Mine Calcium nutrients
     description: Bulk Aqueous phase filtered water
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosample_gold_id_list_as_primary_key.yaml b/src/data/invalid/Database-biosample_gold_id_list_as_primary_key.yaml
@@ -5,7 +5,7 @@ biosample_set:
     name: Lithgow State Coal Mine Calcium nutrients (early)
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -51,7 +51,7 @@ biosample_set:
       - gold:Gb0101225
     name: Lithgow State Coal Mine Calcium nutrients Extra
     description: Bulk Aqueous phase filtered water
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -97,7 +97,7 @@ biosample_set:
       - gold:Gb0101226
     name: Lithgow State Coal Mine Calcium nutrients
     description: Bulk Aqueous phase filtered water
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosample_undeclared_slot.yaml b/src/data/invalid/Database-biosample_undeclared_slot.yaml
@@ -6,7 +6,7 @@ biosample_set:
       - gold:Gb0101224
     name: Lithgow State Coal Mine Calcium nutrients (early)
     description: Bulk Aqueous phase filtered water
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -52,7 +52,7 @@ biosample_set:
     name: Lithgow State Coal Mine Calcium nutrients Extra
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -99,7 +99,7 @@ biosample_set:
     name: Lithgow State Coal Mine Calcium nutrients
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-8675309
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-dna-in-bucket.yaml b/src/data/invalid/Database-biosamples-dna-in-bucket.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-dna-in-plate-invalid-well-val.yaml b/src/data/invalid/Database-biosamples-dna-in-plate-invalid-well-val.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-dna-in-plate-no-well-val.yaml b/src/data/invalid/Database-biosamples-dna-in-plate-no-well-val.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-dna-in-tube-with-well-value.yaml b/src/data/invalid/Database-biosamples-dna-in-tube-with-well-value.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-high-rna_volume.yaml b/src/data/invalid/Database-biosamples-high-rna_volume.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-lat_lon-with-GLV-missing-latitude.yaml b/src/data/invalid/Database-biosamples-lat_lon-with-GLV-missing-latitude.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-lat_lon-with-GLV-missing-longitude.yaml b/src/data/invalid/Database-biosamples-lat_lon-with-GLV-missing-longitude.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-rna-in-bucket.yaml b/src/data/invalid/Database-biosamples-rna-in-bucket.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-rna-in-plate-invalid-well-val.yaml b/src/data/invalid/Database-biosamples-rna-in-plate-invalid-well-val.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-rna-in-plate-no-well-val.yaml b/src/data/invalid/Database-biosamples-rna-in-plate-no-well-val.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-biosamples-rna-in-tube-with-well-value.yaml b/src/data/invalid/Database-biosamples-rna-in-tube-with-well-value.yaml
@@ -1,7 +1,7 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/invalid/Database-data-generation-instrument_name-invalid.yaml b/src/data/invalid/Database-data-generation-instrument_name-invalid.yaml
@@ -13,7 +13,7 @@ data_generation_set:
       - nmdc:dobj-00-9n9n9n
     ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying
       carbon transformations - Permafrost 712P3D
-    part_of:
+    associated_studies:
       - nmdc:dgns-00-555xxx
     processing_institution: JGI
     type: nmdc:NucleotideSequencing

diff --git a/src/data/invalid/Database-data-generation-undefined-omics-processing.yaml b/src/data/invalid/Database-data-generation-undefined-omics-processing.yaml
@@ -49,7 +49,7 @@ data_generation_set:
       - nmdc:dobj-00-thx1198
     ncbi_project_name: Thawing permafrost microbial communities from the Arctic, studying
       carbon transformations - Permafrost 712S3S
-    part_of:
+    associated_studies:
       - nmdc:dgns-00-555xxx
     processing_institution: JGI
     omics_type: THIS SLOT IS NOT AVAILABLE FOR THIS CLAS ANYMORE
diff --git a/src/data/valid/Biosample-embargoed.yaml b/src/data/valid/Biosample-embargoed.yaml
@@ -1,6 +1,6 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:Biosample
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Biosample-minimal.yaml b/src/data/valid/Biosample-minimal.yaml
@@ -1,6 +1,6 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:Biosample
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Biosample-soil_horizon.yaml b/src/data/valid/Biosample-soil_horizon.yaml
@@ -1,6 +1,6 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:Biosample
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Biosample-with-fire.yaml b/src/data/valid/Biosample-with-fire.yaml
@@ -1,7 +1,7 @@
 id: nmdc:bsm-99-dtTMNb
 type: nmdc:Biosample
 fire: 1871-10-01 to 1871-10-31
-part_of:
+associated_studies:
   - nmdc:sty-00-abc123
 env_broad_scale:
   type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosample-exhasutive.yaml b/src/data/valid/Database-biosample-exhasutive.yaml
@@ -7,7 +7,7 @@ biosample_set:
     description: unconstrained text
     alternative_identifiers:
       - generic:abc123
-    part_of:
+    associated_studies:
       - nmdc:sty-00-987654
       - nmdc:sty-00-qwerty
     env_broad_scale:

diff --git a/src/data/valid/Database-biosample_set_low-but-acceptable-rna_volume.yaml b/src/data/valid/Database-biosample_set_low-but-acceptable-rna_volume.yaml
@@ -1,6 +1,6 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosamples-1.yaml b/src/data/valid/Database-biosamples-1.yaml
@@ -5,7 +5,7 @@ biosample_set:
     name: Lithgow State Coal Mine Calcium nutrients (early)
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -61,7 +61,7 @@ biosample_set:
       - SIP
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -114,7 +114,7 @@ biosample_set:
     name: Lithgow State Coal Mine Calcium nutrients Extra
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue
@@ -167,7 +167,7 @@ biosample_set:
     name: Lithgow State Coal Mine Calcium nutrients
     description: Bulk Aqueous phase filtered water
     type: nmdc:Biosample
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosamples-dna-in-plate-valid-well-val.yaml b/src/data/valid/Database-biosamples-dna-in-plate-valid-well-val.yaml
@@ -1,6 +1,6 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosamples-dna-in-tube.yaml b/src/data/valid/Database-biosamples-dna-in-tube.yaml
@@ -1,6 +1,6 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosamples-minimal.yaml b/src/data/valid/Database-biosamples-minimal.yaml
@@ -1,6 +1,6 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosamples-rna-in-plate-valid-well-val.yaml b/src/data/valid/Database-biosamples-rna-in-plate-valid-well-val.yaml
@@ -1,6 +1,6 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue

diff --git a/src/data/valid/Database-biosamples-rna-in-tube.yaml b/src/data/valid/Database-biosamples-rna-in-tube.yaml
@@ -1,6 +1,6 @@
 biosample_set:
   - id: nmdc:bsm-99-dtTMNb
-    part_of:
+    associated_studies:
       - nmdc:sty-00-abc123
     env_broad_scale:
       type: nmdc:ControlledIdentifiedTermValue