Protocol for stratification of TNBC patients

What's Changed

• Update files by @himoto in #1
• Update parameter sets by @himoto in #2
• Add R script for integrating TCGA and CCLE data by @himoto in #3
• Add R script for visualizing breast cancer classification by @himoto in #4
• Update biomass version by @himoto in #5
• Drug response analysis by @himoto in #6
• Update Text2Model by @himoto in #7
• Fix R script by @syamashiro28 in #8
• Update parameter sets by @himoto in #9
• small fix in R script by @syamashiro28 in #10
• Bump BioMASS.jl version to 0.5.0 by @himoto in #11
• Update transcriptomic data integration by @syamashiro28 in #14
• Bump minimal biomass version to 0.5.1 by @himoto in #15
• Drug ccle by @syamashiro28 in #17
• Building a model from text by @himoto in #18
• Merge pull request #18 from pasmopy/text2model by @himoto in #19
• Update viz.py to be compatible with biomass v0.5.2 by @himoto in #20
• Don't use local pasmopy by @himoto in #21
• Update pasmopy version by @himoto in #22
• Make code compatible with the latest pasmopy by @himoto in #23
• Fix arguments in value_transformation by @himoto in #24
• Reduce complexity by @himoto in #25
• Add link to SSRN by @himoto in #26
• Published in iScience by @himoto in #27
• Update test_patient_specific_modeling() by @himoto in #28
• Disable scheduled test by @himoto in #29
• Create index.md by @himoto in #30
• Migrate step-by-step guide to GitHub Pages by @himoto in #32
• Compatible with the newest GDC by @himoto in #35
• Update docs by @himoto in #36

New Contributors

• @himoto made their first contribution in #1
• @syamashiro28 made their first contribution in #8

Full Changelog: https://github.com/pasmopy/breast_cancer/commits/v0.1.0