v1.0

Full Changelog

Implemented enhancements:

• Manage the three possible genotypes in vcf #130
• The graph showing AF vs log10(qval) should show phred-scaled qvalues #121
• Flag possible cross-sample contamination of normal DNA in tumor samples #138
• Put ./. genotype when there is no power to identify a variant #137
• Implement Tumor-Normal pair somatic variant calling #133

Fixed bugs:

• Contours seem to be incorrect #128
• correct file name extraction for sample name #126
• Let min_qval be equal to 0 #119
• plot improved error rate confidence interval #117

Closed issues:

• QUAL should not be reported as Inf in VCF when q-value=0 #125
• Add pipeline execution DAG in README #123