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Patch 1.0.5 (#206) #208

Merged
merged 1 commit into from
Jun 16, 2021
Merged

Patch 1.0.5 (#206) #208

merged 1 commit into from
Jun 16, 2021

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nickhsmith
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Use config file options to turn modules on or off.
build tests to match this functionality

* simplify results output @vyepez88

* add MAE error messages for empty output @mumichae

* more robust dependency graph generation @nickhsmith @mumichae 

* Bump version: 1.0.4 → 1.0.5

Co-authored-by: Vicente <yepez@in.tum.de>
Co-authored-by: nickhsmith <smithnickh@gmail.com>
@mumichae mumichae merged commit 88e9ab6 into dev Jun 16, 2021
c-mertes added a commit that referenced this pull request Jul 21, 2021
Major changes included in this update is:
* adapt to new snakemake version (#208)
* Speedup CI (use micromamba, #218)
* Add HTML cutoff for results (#217)
* Separate modules (#209)
* Update documentation (#228)

On top of this many small bug-fixes are included:
* #175 #192 #198 #231
* Simplify result reporting


Co-authored-by: Vicente Yepez <30469316+vyepez88@users.noreply.github.com>
Co-authored-by: Vicente <yepez@in.tum.de>
Co-authored-by: Michaela Mueller <51025211+mumichae@users.noreply.github.com>
Co-authored-by: Michaela Mueller <mumichae@in.tum.de>
Co-authored-by: Smith Nicholas <smith@in.tum.de>
Co-authored-by: nickhsmith <smithnickh@gmail.com>
Co-authored-by: Christian Mertes <mertes@in.tum.de>
nickhsmith added a commit that referenced this pull request Aug 11, 2021
* Update to version 1.1.0 (#229)

Major changes included in this update is:
* adapt to new snakemake version (#208)
* Speedup CI (use micromamba, #218)
* Add HTML cutoff for results (#217)
* Separate modules (#209)
* Update documentation (#228)

On top of this many small bug-fixes are included:
* #175 #192 #198 #231
* Simplify result reporting


Co-authored-by: Vicente Yepez <30469316+vyepez88@users.noreply.github.com>
Co-authored-by: Vicente <yepez@in.tum.de>
Co-authored-by: Michaela Mueller <51025211+mumichae@users.noreply.github.com>
Co-authored-by: Michaela Mueller <mumichae@in.tum.de>
Co-authored-by: Smith Nicholas <smith@in.tum.de>
Co-authored-by: nickhsmith <smithnickh@gmail.com>
Co-authored-by: Christian Mertes <mertes@in.tum.de>

* add splitting to MAE filterSNVs.sh

* fix broken link and maxVarFreqCohort

* fix broken link and maxVarFreqCohort

* Update test_MAE.py

* code review fixes

Co-authored-by: Michaela Mueller <51025211+mumichae@users.noreply.github.com>
Co-authored-by: Vicente Yepez <30469316+vyepez88@users.noreply.github.com>
Co-authored-by: Vicente <yepez@in.tum.de>
Co-authored-by: Michaela Mueller <mumichae@in.tum.de>
Co-authored-by: Smith Nicholas <smith@in.tum.de>
Co-authored-by: Christian Mertes <mertes@in.tum.de>
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2 participants