v0.3

Full Changelog

Implemented enhancements:

• Change the number of entry in the INFO and FORMAT VCF fields #108
• Add contour lines for a set of qvalues in the plot #100
• color points by qvalues in regression plot #85
• Add an option to choose output VCF file name (--out_vcf?) #81
• Add an option to directly input a region for calling in the command line #71
• Change the way we publish new version #69
• Make the stable docker file more stable #68
• Add more tests in CircleCI #55
• Remove unnecessary intermediate outputs #51
• Improve the bed split method #47
• In the absence of a bed file the pipeline should run on the full reference genome #39
• Add version numbers in VCF output #20

Fixed bugs:

• VCF files have to be sorted #110
• Sometimes large number in VCF files are written in scientific notations #109
• error when coverage is null for every bam file #99
• Calling doesn't work when a region contains only T in the reference #96
• Check that BAM folder contains bam files #66
• Check if the gzi is present if the ref is gz #65
• Verify the user inputs are correct #42